rs30601861 SNP Detail

Summary

• ID
  rs30601861
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:101004572 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTAAA TGAGTCCACA CTGCTGAAAC
  M
  GCGCCCACCC AGACAGTGTT CCTCC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45445273	mCV23027355	ABI	CRAMUS_MOUSE	f	SNP	A	A	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs30601861					SNP	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101004572 () rs orientation: forward

Symbol	Name	Function Class
Ptgfrn	prostaglandin F2 receptor negative regulator	Intron
Rr581955	regulatory region 581955	924 bp distal
Rr581956	regulatory region 581956	within coordinates
Rr581957	regulatory region 581957	841 bp proximal
Rr581958	regulatory region 581958	1025 bp proximal
Tssr34769	transcription start site region 34769	186 bp upstream