rs30601617 SNP Detail

Summary

• ID
  rs30601617
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:56879223 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATACCATT CAGTTTACAG
  AATTTAACCA GCTGGGAAAA CATGCCTGCT GAGGGCAGGT AGCTCAGCCA AGCAACCACT
  CTGCAATCTA AGAAGGAACT CTGAGCGTAA CTTTTAGACC ACTCCTTTCC TGTTGCTGAC
  GGACTGTGCT GCACTTGTGA TATGTGCAGT CCTCTGGTGG ATGCTCTACT TCAAGACAAA
  R
  TGAAAAGATG AAGTTTGGTT GCTGGAGCCG GGAGAGGCAG ATAGGAGGCT GTTGTTGCTC
  AATTGGGCAG AGTTCCAATT TTTAAATAAA AACTGTCCTA TGGGTGGCGT GTGGTGGTAA
  TGGGTGCACA GTAATGTACA TGTATTTATT AGTGTCACCA AACGGTGACT AAAATGGTAC
  CTCTTGTATT ATGCAAATTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45944429	mCV23495457	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30601617					SNP	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:56879223 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm53332	predicted gene, 53332			within coordinates
Nt5c3	5'-nucleotidase, cytosolic III			Intron
				Noncoding-Transcript-Variant
Rr379412	regulatory region 379412			within coordinates
Rr631115	regulatory region 631115			605 bp distal
Rr631116	regulatory region 631116			within coordinates
Rr631117	regulatory region 631117			829 bp proximal
Rr631118	regulatory region 631118			913 bp proximal
Rr631119	regulatory region 631119			1139 bp proximal
Rr631120	regulatory region 631120			1451 bp proximal
Tssr1860	transcription start site region 1860			94 bp upstream
Tssr61149	transcription start site region 61149			400 bp upstream
Tssr61150	transcription start site region 61150			347 bp upstream
Tssr61151	transcription start site region 61151			319 bp upstream