rs30600966 SNP Detail

Summary

• ID
  rs30600966
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:151271551 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCAG GTCCACGTGA ATCGTGAATC
  R
  CAAACACCGG AGAGCAATCA GAAAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
ss45445258	mCV23272543	ABI	CRAMUS_MOUSE	f	SNP	G	A			G		A
ss61101147	NES16603274	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	G		G	A	A	G		A	A
ss136095797	ENSMUSSNP1272978	ENSEMBL	ENSEMBL_Sanger	f	SNP		A					A
ss321026066	CHEV_3_151228878	CHEVERUD	SCREENING_POP	f	SNP										A			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
rs30600966					SNP	G	A	A	G	G	G	A	A	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61101147	NES16603274	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151271551 () rs orientation: forward

Symbol	Name	Function Class
Rr587404	regulatory region 587404	within coordinates
Rr587405	regulatory region 587405	694 bp proximal
Rr587406	regulatory region 587406	943 bp proximal