rs30599247 SNP Detail

Summary

• ID
  rs30599247
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:153664066 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAAGGGCA GGCAGAGTGA
  GGGACTAGGC CAAAGGGTTA CTTTGTCATC CTATACAAAC CAACCAATGC CTGAAAGGGT
  TACTTGCTAT ACCAATGAAA ATAAGCCAGC TAGCCCTGTT GCCTAAATCT GCCCCTTACA
  AGGTATAAAA AGTGTGTTCT TTGTTTGTTC TGGGGTCTCT TCTCTTGCTT GCGTGCTGAG
  R
  AGGGTCCCTA ACACGTTGGA TCAATTAAAA AAAAATCCTC TTGTGGTTTG CAGCGATGGT
  GGTCTCTGTG GTCTTTGTGA GTGAGGGTCT TTTGACTGAC TCTAACACAG GAACTCCATG
  GCCCTGTCAG TTGGACACAT GGGTGGTATT TATATGTGAT TCAGAAATAG CACACTGCCT
  GACAGACACT ACCACACAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47464987	NES10334502	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30599247					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47464987	NES10334502	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153664066 () rs orientation: forward

Symbol	Name	Function Class
Gm64825	predicted gene, 64825	1469 bp upstream
Rr398135	regulatory region 398135	140 bp downstream
Rr587804	regulatory region 587804	979 bp proximal
Rr587805	regulatory region 587805	1156 bp proximal
Rr587806	regulatory region 587806	1480 bp proximal
Tssr32440	transcription start site region 32440	24 bp downstream