rs30598542 SNP Detail

Summary

• ID
  rs30598542
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:55440361 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTCCCTC TTTGAGCTTT
  GAACCTGCTT TTCTGCTTTC TGTCAAAGTT TTTCTATAAT AGACCAGCCC CTCCCCTCCC
  CCATTAAATC TGAAATGAAG TCACGCTGTC CCTATACTAC TGATGTTGTA ATAACTGCTG
  GGGCTGAAGC CAGGTAGCAC ATCTCAGAGA TAATCTGATA TTTCCTTGGG AAAATTAGGC
  R
  TAGAGACAAG AAGTTGGAAT TCTCAGAGAA GAAGAAGATT AAAAACCAAC AAAACAAAAG
  AACCAACAAA ACAAAAGACA ACTCACTTTT ATGAAAATTG ACTTTGTAAA GCGAAACCCA
  TAAAATGTGG TCCCTGGGCT TAGTTTTATT CCAAGCCAGG TTCCCTTGCA GGCTTTGGCT
  TCGTTAAAAT TCATCCAACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46964804	NES10801036	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30598542					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46964804	NES10801036	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:55440361 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dclk1	doublecortin-like kinase 1			Intron
				Noncoding-Transcript-Variant
Rr576959	regulatory region 576959			1299 bp distal
Rr576960	regulatory region 576960			1060 bp distal
Rr576961	regulatory region 576961			146 bp distal
Tssr29169	transcription start site region 29169			838 bp upstream
Tssr29170	transcription start site region 29170			1052 bp upstream