rs30598540 SNP Detail

Summary

• ID
  rs30598540
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:55439827 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCCT AAGTAAGCCA TTTACTGCCC
  R
  GTTCTACACG CTGTCGCTAT CTCGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46964802	NES10801032	PERLEGEN	MM_PANEL2	f	SNP	A		A	G	A	A	A	G	G	A		G	G	A	G		G
ss135188591	ENSMUSSNP7026858	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						G
ss320775341	CHEV_3_55336328	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30598540					SNP	A	A	A	G	A	A	A	G	G	A	A	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46964802	NES10801032	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:55439827 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dclk1	doublecortin-like kinase 1			Intron
				Noncoding-Transcript-Variant
Rr576959	regulatory region 576959			765 bp distal
Rr576960	regulatory region 576960			526 bp distal
Rr576961	regulatory region 576961			234 bp proximal
Tssr29169	transcription start site region 29169			1372 bp upstream
Tssr29170	transcription start site region 29170			1586 bp upstream