rs30598515 SNP Detail

Summary

• ID
  rs30598515
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:55569377 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACACACA CACACTAACT
  ATCTAAGATC TCCAACACAT CCATGGGCTC AGAAATGCTC TGCAGAGCCA CGTAAGGAAA
  CTTATGTTTC TTGCCAGAAG TTCCCAGGCT CCCAGGTGCT GGGCTCTGCT GGGCTCTGCT
  GGGCTCTGCT GGGCTCTGCT CACATTTGAG GAGCAGGAAG GAAGAAGCCA TAGCACGCTG
  Y
  GGCTTCTAAC CAGAACCCTC TTCCTACGCA GGTCACAGGT CACTTGGTAG GGACAAATAT
  AAAGAAAATG ATAACTTTTA TTAATGTGAA AAAGGGGGAA GAAAGCCTAT TCATTGTCAT
  GCTTTAAAGC CACTGCCCAA ATAGTTGAGC CATCATGAGA AAGAGCCCAG GAGATAATGA
  TGTAAGACAA GACTTAAGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46964992	NES10799451	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30598515					SNP	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46964992	NES10799451	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:55569377 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nbea	neurobeachin			Intron
				Noncoding-Transcript-Variant
Rr576985	regulatory region 576985			1316 bp distal
Rr576986	regulatory region 576986			within coordinates
Rr576987	regulatory region 576987			188 bp proximal