rs30598368 SNP Detail

Summary

• ID
  rs30598368
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:153664480 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGTTAAGA GGAACATAGA
  CTCAGAAGCT ATGCTCAACA GAGAAACCCC GACTCTGCTC AATCTCTGGT TGTTTGGTTG
  GTTAGTTTTG TTCAGTGGCT GAGGTCTCAG ATCCCTGGAC AATCTGTGTT TTCACAACCT
  CCCCGAGGTA TCCCAGTGAC ACTTAGTTTG AAATTCATTT TTAAGTACTG CCATGTCAAA
  R
  TCCAAAGAGA ACTGACAGAC CCAAGGACAC ACCAGGCAGA TTGGACCAAG GAGCCAAGGA
  AAGAGGTTTA GGCTCAGAGT TTTCTGCTCA GGGCCGAAGA TGTGGATAGT AAAGAGAGCC
  AGGAAAACAA AATTCCCCCA GCCCTGGATT GTGAGTACGT GCACACACAC ACACACACAC
  ACACACACAC ACACATACTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47464978	NES10334497	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30598368					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47464978	NES10334497	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153664480 () rs orientation: forward

Symbol	Name	Function Class
Gm64825	predicted gene, 64825	1055 bp upstream
Rr398135	regulatory region 398135	554 bp downstream
Rr587804	regulatory region 587804	565 bp proximal
Rr587805	regulatory region 587805	742 bp proximal
Rr587806	regulatory region 587806	1066 bp proximal
Tssr32440	transcription start site region 32440	438 bp downstream