rs30598260 SNP Detail

Summary

• ID
  rs30598260
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:26184200 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAAAACTCC ATCTTCTATG
  TCACTAGTGT GTTCAAGTGT TCTGCATTAG CATCTAATTT TAATAACTCA TTTTCTTTTC
  ATTTTTTTAA AATTGACAGA ACTCTGAAGG CAATGTCTAG AATGTCTAGA AAGCAATTAA
  CATATAGTTA AAATTATCCT GGGACATATA GAAAGATACA TTAAAATGTG TAACAGAGAC
  Y
  TGTTTTAAAA CAAAGGCAGC CCTTTGATGC TATTCTTTAA ATGTGTTTTC TAACTTCAAA
  TGCAGAGGAG AGTGTTGCAA AAGGTATTTT AAAAATATAA CATGACATCT CCTGGAGGGA
  GAAATTTTTC TTCCTTTTGT ACAGATCAAA GAAAAGAAAA TGCGTTGTTC TTTGCAAAGT
  CATTTGGATG TAAGCTCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45444939	mCV24227184	ABI	CRAMUS_MOUSE	f	SNP		C					T		T
ss51446514	NES14439056	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	T	T	C		T	T	T	T	T	T	T	T	T
ss134692039	ENSMUSSNP1760266	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30598260					SNP	T	C	C	T	T	C	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51446514	NES14439056	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:26184200 () rs orientation: forward

Symbol	Name	Function Class
Nlgn1	neuroligin 1	Intron
Rr574304	regulatory region 574304	989 bp proximal