rs30598259 SNP Detail

Summary

• ID
  rs30598259
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:27172021 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAAATGGA TACATTAATG
  TATACATAGA GAAATTACAG TAATAAAGCT AAGGCTCAAC GAGGACAAGC GAGTTAAGTT
  AAGGAACGCT TCCTCCATGA GCTTACCTTC TGTCTCTCGG ATGTCCAGCA CCTTCTTAAT
  CTGAGAAAGA GGCATGAGAT GAATGTGCTT CAGAGAAGCG GGGGGCCGGG TGCGGTCGTG
  R
  GGACTTCTAA AAGTGCCAAT AACCTTGTGC CGCTTTCTTG CTATCTGATT GTAGGGGGAA
  AGTCAATCAT TATTGTAATA AAGCCAAATT TCAAACATTT AAAAATAACA GCGTCAATCA
  CATAAATGTA TAGGCAACTA ATCTGAAGAT TAGCCATGCC AGTTACTATG CAATAAAAGC
  AAGAGACTGA CGAAAAAGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45444938	mCV24689235	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
ss134702176	ENSMUSSNP5286201	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs30598259					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27172021 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ect2	epithelial cell transforming 2			Coding-Synonymous
				mRNA-UTR
Rr574348	regulatory region 574348			549 bp proximal