rs30598134 SNP Detail

Summary

• ID
  rs30598134
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:26693581 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCACTTCAG CCTGCCTGGC
  TGCGGTTCTG TCATTGCGAG AGACCATGTC ATTACCCTGG CATGCCTGGC ACACAATGGG
  CACGCTGAAA GGCTGCAGCT GATGTGGGAA AGAGGGATAC AGCTGGAAGC AAGGCTGTTG
  TTGCCTTGTC TCCCAGGCAC ACAGATTTAA AGTATCCAAA GCGCTTCTGA AAGTGCGCAG
  R
  TCTGCCTAAC TTCACCCGTT GCCATGGTGA GCAACACAAA CGTAATCAAG ATTGAACTGA
  GACGTTGTTT TGTTCCACAA GTGAACTTTC CACTGAAGTA TGTATCCTGT ATTGTTCAGT
  CTGTTATTCA TCTGTGTTAT TATAACCAAA TGGCAAATTC CTCCCATCTG GTCATTTTTC
  AAAGAGATTT TAAAAGCCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45444449	mCV24231362	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	G
ss134696964	ENSMUSSNP3547974	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs30598134					SNP	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:26693581 () rs orientation: forward

Symbol	Name	Function Class
Gm65182	predicted gene, 65182	1878 bp upstream
Gm65438	predicted gene, 65438	within coordinates
Rr574324	regulatory region 574324	within coordinates
Rr574325	regulatory region 574325	15 bp proximal
Rr574326	regulatory region 574326	724 bp proximal
Spata16	spermatogenesis associated 16	Intron
Tssr28597	transcription start site region 28597	1795 bp downstream
Tssr28598	transcription start site region 28598	1772 bp downstream