rs30597641 SNP Detail

Summary

• ID
  rs30597641
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:55568235 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAATCTCGT GCCCTCTGCT
  GGTCTCCATG GGCCCTGCAG GCTTGTAATG CACTTATCAA CAATGCAGAA ACATAAATTC
  AAATAATATT TTAAGAAAAC TAAATTATTG ACATAAAAAA AGAAGTACAA ATAATACTTA
  AGGACAAATA TTAGCTTAGA ACAAGACATA CAGTGTTATT CTTGATCTTC CTAATATCCA
  Y
  ACGACAGGGA AAACACAGCG GCTGTAGGCT GTAGCTGAGA TGGCTGTATG GGAATGGAAG
  GTAGGTTTGA AACAGTGGAG CATCCAGGGC AGGAGGCACA GATGTTATTA TATAAAATTG
  TGATATGATG CTAGCTATCC CATTTTACTA TATGTACAGA AAAGCAGAAC TTCCTCTCAA
  GTAGCTCTAG CATATCTAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46964988	NES10799446	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30597641					SNP	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46964988	NES10799446	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:55568235 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nbea	neurobeachin			Intron
				Noncoding-Transcript-Variant
Rr576985	regulatory region 576985			174 bp distal
Rr576986	regulatory region 576986			894 bp proximal
Rr576987	regulatory region 576987			1330 bp proximal