rs30597261 SNP Detail

Summary

• ID
  rs30597261
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:69027991 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTTCCACA GCCATGGCTA
  CAAAAAGAAA CCCTGCCTTG GAAAAACAAA CAAACACCCC AAAAAGTACT GATTCTAATT
  TCCAAATTGG AAAAAATTGA AAAAGATCCA CAAATTAAAA ACTAAAAGTC TGTAATGAGT
  TTTGAACCTC AAACATCTAC AGACAGACTT CTGAACTAAA ACAAGACTTC TTCCTTCCTC
  Y
  TCTTCCTCCT CCTTTCTCTT CTTCCTCCTC TTCAGTCTTA CCAAAGGCCA GTCTGACTTC
  AAACTCACAG CAATTCTCCT GCCTCAGCCT GAGCCTGTTC AGAAAAGATT GCCTGGGACT
  GGAATTACGA ATGAACACGA GGAGCCATGT GGGTGACAGG AACTGAACCA GAATGAGGAC
  AACCAAGTCC TCTTAACCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45445415	mCV24616053	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss135265104	ENSMUSSNP3287689	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T
ss320791940	CHEV_3_68924580	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30597261					SNP	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:69027991 () rs orientation: forward

Symbol	Name	Function Class
Gm37558	predicted gene, 37558	within coordinates
Kpna4	karyopherin subunit alpha 4	Intron
Rr578128	regulatory region 578128	1409 bp distal