rs30597047 SNP Detail

Summary

• ID
  rs30597047
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:87664134 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCAC CACCTCCTGC CCCACTCCAA
  Y
  TTCCTAGGGC GTCACACTCA CCGAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45445498	mCV25326074	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss135468122	ENSMUSSNP4454636	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss320835372	CHEV_3_87560749	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30597047					SNP	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87664134 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13335	CpG island 13335	within coordinates
Pear1	platelet endothelial aggregation receptor 1	Intron
Rr579538	regulatory region 579538	686 bp distal