rs30596848 SNP Detail

Summary

• ID
  rs30596848
• Variation Type
  SNP
• Alleles
  C/G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:82051283 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCGGA CCAGAAAATG TTCAGCTTAT
  B
  GGTGTTAACT TCTGTCGTTA TTTTG                                      
  
  B = C/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45445599	mCV24169923	ABI	CRAMUS_MOUSE	f	SNP	T	T	C					C		C
ss46713104	NES10751753	PERLEGEN	MM_PANEL2	f	SNP			C	C	C	C	C		G	C	C	C	G	C	C	G	C
ss135401150	ENSMUSSNP2420141	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30596848					SNP	T	T	C	C	C	C	C	C	G	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46713104	NES10751753	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:82051283 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13288	CpG island 13288			896 bp proximal
Gucy1a1	guanylate cyclase 1, soluble, alpha 1			Intron
				Noncoding-Transcript-Variant
Rr578750	regulatory region 578750			658 bp proximal
Rr578751	regulatory region 578751			1087 bp proximal
Rr578752	regulatory region 578752			1801 bp proximal
Tssr33784	transcription start site region 33784			1762 bp downstream
Tssr33785	transcription start site region 33785			1782 bp downstream
Tssr33786	transcription start site region 33786			1889 bp downstream