rs30596653 SNP Detail

Summary

• ID
  rs30596653
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:153665778 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTTTGTGG GCTGTTTTAT
  CACTAGAGGC TCAGTTCAAG CACTGTCAAG CACGAGGTGG GTGACCTGTA CTCTGCCCTA
  TGAAGCCGTT AAGTACCAAG CAGTAACAGG GTAAAGCAGG GTGTGCTGGG TAAATGGCAG
  CGGGCTCCAC CAAAGGAAGG ACACACACTG ATAATTCTAA AGGAAGCTAC TGGGTCACAC
  K
  TAGTGGATGA GCGAAGGCCT TCAAAGGTCT TGAACCAGTT TGGCTGGCTC TAGTGGAAGC
  CAATCCAAGC CATTGAAAGA GAGGTCAAAT TGTGTGTATG TGATTGTATA TGTGTGTTCC
  TGTGTGTATG TTCTTATGTG TGTTTCTTCT TGTGCGTGTG TTTCTGTATG TGATTTTACA
  TATGTTCTTG TGTGTGTTTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47464963	NES10334478	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30596653					SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47464963	NES10334478	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153665778 () rs orientation: forward

Symbol	Name	Function Class
Gm64825	predicted gene, 64825	within coordinates
Rr398135	regulatory region 398135	1852 bp downstream
Rr587804	regulatory region 587804	233 bp distal
Rr587805	regulatory region 587805	535 bp distal
Rr587806	regulatory region 587806	within coordinates
Rr587807	regulatory region 587807	1961 bp proximal
Tssr32440	transcription start site region 32440	1736 bp downstream