rs30595728 SNP Detail

Summary

• ID
  rs30595728
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:153667214 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGACGAGTT TCTATGCAGC
  CACTTGGGGA GCTTAGTGTG GCCTCTTCAG TGAATGCTGT CCTCTGTGGC TGCAGCCTTG
  GAGACTAGAA AAGATTGTGG AAGTGACCCT AAGCAAGTAC ACTGCTTAAA GATAACAGGC
  AGAGGAGAGA ATCCGCAAAT CTCAGTAGCC AGGCAGAGAT CCGGTGAGCC AGGCGATACC
  Y
  AGGACTCAGC AGAAACCCAC AGGGCAGTGG TTCTCAGCCT TCCTAATGCT GCCACTTTCT
  TTTTCTTCTT TCTTTTTCTT GGATATTTTC CTTATTTACA TTTCAAATGT TGTCCCCTTC
  CCAGCTCCTC CCAAACTCCT TACCCCATAC CCCTCCCCCT GCTTCTATGA GCGTTCTCCC
  CCACTCACCC ACCTACTCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47464948	NES10334454	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30595728					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47464948	NES10334454	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153667214 () rs orientation: forward

Symbol	Name	Function Class
Gm64825	predicted gene, 64825	within coordinates
Rr587804	regulatory region 587804	1669 bp distal
Rr587805	regulatory region 587805	1971 bp distal
Rr587806	regulatory region 587806	1418 bp distal
Rr587807	regulatory region 587807	525 bp proximal
Rr587808	regulatory region 587808	610 bp proximal