rs30595093 SNP Detail

Summary

• ID
  rs30595093
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:55438074 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGATGCAGA GGAGAACAGT
  CACGATTTAT GTTAGACACA CAGTGAACAT ACTACATACC ACACTGGAAA TGGGTATGGA
  CGAGCATCTA AAAATGAACC ACAGTTCACA GAGCTCGAAA TAGAATGTGC AAGGGCTCAG
  GGAGCAGAGG TTTATGGAAA CAGATACCTT CTAGGTAGTC TTTGGTTACA GTTGCTGATA
  R
  CTACTGCAGT GACTCAGATG GGCAGAAAAC CCTTCTTTCT GTGGTGAGCC CTACACCTAG
  AAGGTCCCCA GGTTTACAGT GGGTTGAACT CACTGGATCA TGATTTACTG TTCCCCATGA
  TTTTCTCCGA CGGGCAGCAT ACAGTCTTGC AAACTGTCTG TGGCCCGGGG TCTTCTCCCG
  GCTACTGGGG ATGAGAAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46964764	NES10801012	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30595093					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46964764	NES10801012	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:55438074 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dclk1	doublecortin-like kinase 1			Intron
				Noncoding-Transcript-Variant
Rr576959	regulatory region 576959			628 bp proximal
Rr576960	regulatory region 576960			1112 bp proximal
Rr576961	regulatory region 576961			1987 bp proximal