rs30594962 SNP Detail

Summary

• ID
  rs30594962
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:153667935 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTGATATG GAACCCCCAA
  AGGGGTGGAG ACCCTGCACA GACTGAGGAT CACTGTCCAC AGGGGAAGCC CACAGGAGCA
  GCTGCTGAAC TACTGCCACC TAGAGGAACC TTGGAGAAAA ACGGCCCCTC TTACCTAACA
  TGGAGGTCCA CCCTCTAGCT TGGAGAAACA GTAACCAGTG AGTTAGGGGC CTGAGTCTAG
  R
  AAATAAAAAG CAGCCAGTTT AAACTCGCTG TGCCTGCTTT TAGCTGTGAT GGTTGAGCAG
  CCCTCGTCTC TTTACCTTTC ACCCTACCTC ACCCTTTAAT ATTACTGTGG GCGTTGTTGC
  TGATGTTCTC CGTGGAAGCC CTGGAACTTA CCCTGTAGAT CAGGCTGGAC TTGAACTCAT
  AAATCTATCC ACCTCTTCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47464942	NES10334396	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30594962					SNP	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47464942	NES10334396	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153667935 () rs orientation: forward

Symbol	Name	Function Class
Gm64825	predicted gene, 64825	within coordinates
Rr587807	regulatory region 587807	11 bp distal
Rr587808	regulatory region 587808	90 bp distal