rs30592490 SNP Detail

Summary

• ID
  rs30592490
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:172317670 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACTC GGCTCTGGCT CTCCCCCTAG
  Y
  TCCCGTCATG CAGCCTGTGT TCAGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss44943606	mCV23003460	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss120011513	PARCsnp_1.19835	PARC_SEQ	INBRED	f	SNP			T	C
ss120014507	PARCsnp_1.09876	PARC_SEQ	INBRED	f	SNP			T	C
ss146193598	ENSMUSSNP3903644	ENSEMBL	ENSEMBL_Sanger	f	SNP				C
ss320125700	CHEV_1_174420234	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30592490					SNP	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172317670 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi1051	CpG island 1051			410 bp proximal
Igsf9	immunoglobulin superfamily, member 9			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr423587	regulatory region 423587			967 bp distal
Rr423588	regulatory region 423588			395 bp distal
Rr423589	regulatory region 423589			464 bp proximal
Rr423590	regulatory region 423590			643 bp proximal