rs30589057 SNP Detail

Summary

• ID
  rs30589057
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153845089 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGCATCGT ATCTTGGTTA
  TAAAATCGTC TAGGGATAGA GGGACCCTTG AGTGAGGAGT CTCCTTGGAC AGTCAGGAGT
  CCAAGGGCAA GGCCAGCAGA GGTGTTGCCC CGAAGCTCTG CCTCTTTCTC GCAGGAGCCA
  CCCACCATGA GCACATCCTC AGCTCCTAGG AACAGAGCTG TGGCTGGGGA ACCATCCTGA
  R
  AGCATGAAGC CTAGAAGTCA GGGTGTGCCT GTGTGGCATG GCACTGACTG ACATTCGTCT
  TTTCTTTTTA ATTGTTCCTT CGATATTTGC ATGTCTTTTT AAGACTATGA TGTTAAAGCG
  TGTGTTAACA ATGTGAGTGA ATTTAGGTAA ATCAAAGTAT TGAACATCTG TCAGTTGAGC
  TTAACCAATA GGAACATTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45507559	mCV23322570	ABI	CRAMUS_MOUSE	f	SNP		G	A					A		A
ss47463898	NES10332198	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	A	G	A		A	A	A	A		A	A	A		A
ss136115815	ENSMUSSNP6690433	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A							A
ss321032057	CHEV_3_153802416	CHEVERUD	SCREENING_POP	f	SNP													G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30589057					SNP	G	G	A	G	A	G	A	A	A	A	A	A	G	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47463898	NES10332198	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153845089 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm42541	predicted gene 42541			within coordinates
Rr587827	regulatory region 587827			1994 bp proximal
Slc44a5	solute carrier family 44, member 5			Intron
				Noncoding-Transcript-Variant