rs30588421 SNP Detail

Summary

• ID
  rs30588421
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153846273 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATGTATAA TTTCTCTGTA
  GTGTCTGAGT CCTCAGAGAC CTCAGGATGT ATCCTTTCTC TGTAGCATCT GAGTACTGAG
  AGACCTTACG ATGTATGCAG CATGTATCCT ATCTCTTTCC TACATGACTC TCTCTGGTCA
  CTTAACATTA ACTCCCAAAT GTTCCCCTCC AGACCAGTTT CTCTTTCTTG ATCTGGACTT
  M
  TTTATTGACT GTCCGGACCC ATGGGAACTT ATGCCATCTC TGAACTGCCA TTTCTCACAA
  ACTCTGCATC AGAGCCAAAA CCTTAATACC ACTGGCTGGT GTCCATAGTC TCTTGCCTCA
  ATGTTTTAGA TGCAGCAATT ATCTGGAGCC CATTTTCCTT AGAGCAGTCA GAGGACTATT
  GAAGTCAGGG TGAGGACAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45459481	mCV23322564	ABI	CRAMUS_MOUSE	f	SNP	A	A	C					C		C
ss47463892	NES10332170	PERLEGEN	MM_PANEL2	f	SNP	A		C	A	C	A	C		C	C	C	C		C	C	C	C		C
ss136115824	ENSMUSSNP1186956	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C							C
ss321032060	CHEV_3_153803600	CHEVERUD	SCREENING_POP	f	SNP													A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30588421					SNP	A	A	C	A	C	A	C	C	C	C	C	C	A	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47463892	NES10332170	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153846273 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm42541	predicted gene 42541			within coordinates
Rr587827	regulatory region 587827			810 bp proximal
Slc44a5	solute carrier family 44, member 5			Intron
				Noncoding-Transcript-Variant