rs30587317 SNP Detail

Summary

• ID
  rs30587317
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153848729 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGACGCTC TGGCTTTTGT
  CTCTAGAGTT CCACTTGGTC AGTCTCTCCC CAGCCAATGA GACTGGCTCT GTAGCTCTCT
  TCTTTGACTC TCATACAAAA TGGTGAGCAT CTATGTGGCA CTTCCCAAAG ACAAGAGTTT
  AGAGAACAGG GCGGTGGGAT TCCCCTCGTC TGCTACTTCT GTGGATCATG ACGGTGAAAC
  K
  CAGATGCTGA AGAACTCACA TACAAGCCAT TCTGATGATT AACTCCAGGG CTGGACAAGG
  CTCGGGTCCT GAGGCTGAGC TCATTCTATC CCATCCTCTT GAATTTCACT TTCCATTTCA
  TTATGGCATC GTACTCCTAA AAATGTTTCA GCGTCCTATA GCTGTTGTAA CAGACAATAA
  AAATGCCTTT TGTGCAAAAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47463877	NES10332106	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30587317					SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47463877	NES10332106	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153848729 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm42541	predicted gene 42541			1747 bp downstream
Rr587827	regulatory region 587827			1440 bp distal
Slc44a5	solute carrier family 44, member 5			Intron
				Noncoding-Transcript-Variant