rs30581425 SNP Detail

Summary

• ID
  rs30581425
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:88739858 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GAGGC GGAGTCTTCT GCCAAGGGCC
  K
  TTCAGAAGAG GCGGAGCCTA TCTCT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	FVB/NJ	NZW/LacJ
ss46423830	mCV22843937	ABI	CRAMUS_MOUSE	f	SNP		T	G				T
ss46745780	NES10754913	PERLEGEN	MM_PANEL2	r	SNP	A		C	C	C	C		C	C
ss135472283	ENSMUSSNP7110102	ENSEMBL	ENSEMBL_Sanger	r	SNP		A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	FVB/NJ	NZW/LacJ
rs30581425					SNP	T	T	G	G	G	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46745780	NES10754913	PERLEGEN	MM_PANEL	r	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:88739858 () rs orientation: reverse

Symbol	Name	Function Class
1500004A13Rik	RIKEN cDNA 1500004A13 gene	4 bp upstream
Gm64348	predicted gene, 64348	within coordinates
Rr375322	regulatory region 375322	459 bp downstream
Rr397779	regulatory region 397779	within coordinates
Rr579901	regulatory region 579901	1104 bp distal
Rr579902	regulatory region 579902	76 bp distal
Rr579903	regulatory region 579903	957 bp distal
Rr579904	regulatory region 579904	within coordinates
Tssr34067	transcription start site region 34067	within coordinates