rs30578215 SNP Detail

Summary

• ID
  rs30578215
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:55320743 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCTCCACT TGAAAGGTTC
  TACATTCTGG TAAGCTTCTT AAAGGTTAAG CATATCAGTT GGCAGTAGCC ATTAAGAGAA
  GAGAACATGG TTGGCTAGCA GGGGTTGACT ATGGTCTCTG CCCATTCTCC CCACATTTGG
  CTCTTTCCCC TCACTATGCC TGTGTCACCC TCTTAGAACT TCCCTGCATT CTGAATCCAG
  Y
  GTGAGTGTTA GGCCAATAGC TAGCTTAGGT CTTTAGCAGC TGGAGATTGC CTACAATGAT
  GTTTTGATCT CTGCTCACAC TTTCTCAGGA TAAGTAGTGG TTTAAGGAAT GTCGTGTTGT
  CATGGCATTA TATTCATGCA GGTGTTGGCC GTGCAGCTGG GATTCAAATT AAGTCACTAC
  CCAGCTATAA GTGCTCATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46963345	NES10799592	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30578215					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46963345	NES10799592	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:55320743 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dclk1	doublecortin-like kinase 1			Intron
				Noncoding-Transcript-Variant
Rr576936	regulatory region 576936			1599 bp distal