rs30574402 SNP Detail

Summary

• ID
  rs30574402
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:151556959 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTGGGTGA GACCTGTGGG
  CTGCCCTGGT GAGGGTTCGC AAGTGAATCT GTAAAGAACT CCAAGTTTGT TTTGAACATC
  ATTACCAACA GCAGCTTTTG GATTGATTCT TGTTTGGTGC TCCAGTATAA ACATTCGACA
  ACACACCAGT CACATATAGC CAAACTTCCT TACTTACGGT ACTATCTAGT ACTGATTCAG
  M
  TGAAATGACC AGAGTTTCAC TAGAATTAGA GGCATAAAGC CAAAGGATGT GGACAGAAGC
  AAGCACCTAG TGCCTCAAGG AATAAGCAGC TGTGTTTACC AACATACACC ACAAACTGGC
  CAAGAACAGT GATCCCACAT AGCTGAGTCC ATAGCAGACA ATATGTGTGG GCTGTTGCAC
  TGAGAACCCA AGGTTTATTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45444246	mCV24029242	ABI	CRAMUS_MOUSE	f	SNP	A	C	C	C
ss136099242	ENSMUSSNP4161276	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss321027288	CHEV_3_151514286	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30574402					SNP	A	C	C	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151556959 () rs orientation: forward

Symbol	Name	Function Class
Gm31596	predicted gene, 31596	within coordinates
Rr587424	regulatory region 587424	103 bp proximal