rs30572579 SNP Detail

Summary

• ID
  rs30572579
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:50579592 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GATTCACAGT TGCCTAGGTG GAGCCCTTAG AAACAATGAA AGCCAATTTG GCTACTTAGG
  GTCCAAGGCA TGCATAGGTA GGATAGCCTC TGCCAGTCAC TTGCAGGGTA GTGGCTTTCT
  TTGGTTGAAT CAGTGTCCCT TGCACTGCAG CTGAAGCTTT TTCTTAGGAT TGAATCGGGT
  AGAACTTAGG GTGATTTGAC CAAGAAGAGA CTTTTATGAG ATGTGCAGCA AATCCCTACT
  AAGACATGCA GCTTTTTTGT TTTGTTTTTG TTTTTGTTTT TTTTTTGTTT TTTGTTTTTT
  K
  TTTTTTCCGA AACAGGGTTT CTCTGAATAG CCCTGGCTGT CCTGGAACTC ACTTGTAGAC
  CAGGCTGGCC TTGAACTCAG AAATCCACCT GCCTCTGCCT CTGCTGCCTC CCGAGTGCTG
  GGATTAAAGG GGTGTGCCAC CATGCCCGGC GCAGCTTTGT TATAAATACC TTCTTTATAG
  CCAGTGTTGG AAGTGTCTGA GTCTCTTCTG ATACAGGAGG TCATGCTGCA TGGTAATTCA
  TTTTATGTTG TCTTCCTTTC TGGTGTTAAA ATTCCACCTA GAGAAGAAAC TAGATCCTAT
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45943282	mCV24540474	ABI	CRAMUS_MOUSE	f	SNP	T	T	G	G	G
ss133182438	ENSMUSSNP132802	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30572579					SNP	T	T	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50579592 () rs orientation: forward

Symbol	Name	Function Class
Gm38807	predicted gene, 38807	within coordinates
Rr630049	regulatory region 630049	639 bp distal
Rr630050	regulatory region 630050	796 bp distal