rs30566104 SNP Detail

Summary

• ID
  rs30566104
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:101004350 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ACCATGTGAT CAAGTTACTT AAAACAAAGA AACAAACAAA TAGTATGCTT TAAGTTTATG
  GCTTTGTGTT GGACAACGTG TATGGCATGT GTGGCTCTTC TCAAAGGCTT GCAACACACC
  CTCTCCCTTA CTCGTCATCC TGCACTCCAG CTGCAAGCTT TTTTTATTCA TTCAAAGCCA
  ACTTCCAGGA AAGGGGGGGG GGTGGCGGGG GCACACACCT GTAATACCAG CACTTGAGAT
  AAAAAAAAAA AAAAGGATCT TAAATGTGAG GCCAGATTAG GATTTATCAT GTGCTTTCAA
  W
  ACCAGCCTGG TTTCCATAGG GAGACCTTGT CTCAAGAAAA AAAAAAAAAA AAAAAAAAAA
  AAAACAGAAA ATAAAACAAA CAGCCAACAA GCTCTTATAA ACCAGTGTAT TTCTTTGCCT
  GCATTCTTCC ATCTGCTTGG AAAACCCACC CCCTCTCAGC CAGACAAAAC CTACTGAATT
  TCAGGACCTA ATGAGCTTAA ATGAGTCCAC ACTGCTGAAA CAGCGCCCAC CCAGACAGTG
  TTCCTCCGGT GCCTACATAG GGCCAGCCCA CCCATGAGCA TTCTGGGCTG TCAGTCTCCC
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45444043	mCV23027348	ABI	CRAMUS_MOUSE	f	SNP	T	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs30566104					SNP	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101004350 () rs orientation: forward

Symbol	Name	Function Class
Ptgfrn	prostaglandin F2 receptor negative regulator	Intron
Rr581955	regulatory region 581955	702 bp distal
Rr581956	regulatory region 581956	60 bp proximal
Rr581957	regulatory region 581957	1063 bp proximal
Rr581958	regulatory region 581958	1247 bp proximal
Tssr34769	transcription start site region 34769	31 bp downstream