rs30564200 SNP Detail

Summary

• ID
  rs30564200
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54494841 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GTTTTTTTTT AAATAGGATT TAGAAAATAA ATATTATTTC AGTTTCAATT TGCTACATCC
  AGCATTACTA TTAAAATAAG CAAATGTACA TGAAATTAGA TTAAGAAAAA TACAAACTCG
  CTCATGCTAC GCCTGTTTAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AACGCTAACT
  ATCTGCCTCA GAAGAGCTTT GCGAATGTAA CATTTGGTTT TAGCTGTGGA AAGTGCTTAA
  GTGCAGTGAA ACCTTAAATC ATCTGCAGCG TTTCAGGGCA AACGCTGGCC GGTGCCCTGT
  W
  TAAATCTTGC CCTAAAGCTA AGACGAAGAA TGTGCTAAGC AGACCCAGTG AGCGGCTCGG
  CTCGCCAGGC TCCTCCCTAG GAAAATGTGG CTTTCCTATA CATCACTCGA TTCAAAACAG
  ATGGGGAACA ACCATCTGCC AGAAGGAAAG GAAAGATGTA GCGCATATTA TAATTACGGG
  ATTCAGACAA ACAAGGGGAA GGGGAAGATG ACTTTAAAGC AAATAGGCAG TCCCTTCTAT
  GAACGCTTTC TCTCCCGAGT CCAGCATTCT CGGAAGAAAA TGGCGTCATC TCAGAAGCAT
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45443657	mCV25033920	ABI	CRAMUS_MOUSE	f	SNP	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30564200					SNP	A	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54494841 () rs orientation: forward

Symbol	Name	Function Class
Gm40050	predicted gene, 40050	within coordinates
Rr576811	regulatory region 576811	within coordinates
Rr576812	regulatory region 576812	828 bp proximal