rs30563996 SNP Detail

Summary

• ID
  rs30563996
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:105611192 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCAGAAGCA CCCCTTTCGC TGTGCCCCAA CTCCACCCCT
  TACACCCCTA GGAGTTACTG CATGGGTACC AGGGAAATGC CTGTCAACTA TCCTCAGAGC
  R
  TCCTCAAGTC CTCTTCTCCC CTATTCAAGA AGGCCAGCAT TAGGGAGTTC TAGGAAGGGA
  AAGGCCTGTT TCTCCACTCC CTGCCAACTC TATTGAAAC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45443933	mCV22876895	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss320863078	CHEV_3_105506794	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs30563996					SNP	G	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:105611192 () rs orientation: forward

Symbol	Name	Function Class
Inka2	inka box actin regulator 2	723 bp upstream
Rr367522	regulatory region 367522	546 bp upstream
Rr582755	regulatory region 582755	1877 bp distal
Rr582756	regulatory region 582756	233 bp proximal
Rr582757	regulatory region 582757	1092 bp proximal
Rr582758	regulatory region 582758	1593 bp proximal
Tssr31079	transcription start site region 31079	781 bp upstream
Tssr31080	transcription start site region 31080	812 bp upstream