rs30563685 SNP Detail

Summary

• ID
  rs30563685
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:148401485 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGGAGAAAG GTCAGTCTCG GCGCCGTATC TGTTTTTCGT
  TTTTGCTTTG TGTTATTCTT GTTTGCCTTT TGTTGTTAGG TTGTAGGAGT TGTTTTTTTT
  Y
  CCCATTTATT CTGTGTGCAA AAATCTTACC AGACATGTTA CCCAAAAGCA AACAGTAGAT
  AATAGGTAAA ATAGGTTATA TTTCCCCCTA ATGTTCACA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss45443362	mCV24064363	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss136062995	ENSMUSSNP4229753	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs30563685					SNP	C	?	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:148401485 () rs orientation: forward

Symbol	Name	Function Class
Rr398123	regulatory region 398123	22 bp downstream
Rr587206	regulatory region 587206	within coordinates
Rr587207	regulatory region 587207	462 bp distal
Rr587208	regulatory region 587208	171 bp distal
Rr587209	regulatory region 587209	78 bp proximal
Rr587210	regulatory region 587210	717 bp proximal