rs30563639 SNP Detail

Summary

• ID
  rs30563639
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:55129304 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCTGGGAA GGGTTGGTTA
  ACACTTGTTT CTTCTCCCAT TTTCTCCTCT GCATTTCTGC TCCAGTGCAA TTACCTTGCT
  AGAAGGGGCA CTTGTCCCAG GACTGGGCCT CTATGAACTA TCACAAAGCA AACACTGTGA
  GGCAACATCC AGGACAAGAA ATCAACTGCT GTTCACAGTC TCAAGGACAG CTCATCCCTA
  Y
  GAAGCTAATG AGCTATTGCC TTGGCTACAG CCATGCTTAT GGGAAATTGT CCTAGAATGT
  GGTTGTCTTT CTTTCTGTGT GCTTTCTTTT GCTCAGCATT GGTTGTTACA CCTAACAGGA
  GCCACTGGGG CCTAAGCACT TGTTCTTTCT CCTTTTCCTG AGTGAACAGA GGTTTTCACA
  GAGGCGTGTC AGGCTGTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss46961231	NES10811630	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	T	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs30563639					SNP	T	T	C	T	T	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46961231	NES10811630	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:55129304 () rs orientation: forward

Symbol	Name	Function Class
Rr576916	regulatory region 576916	812 bp proximal