rs30563598 SNP Detail

Summary

• ID
  rs30563598
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:110050461 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCGC CGCCTTCCGA GGTCTCGGCA
  R
  CCTTCTCCGC TCGCAGCTTC CCCGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45443157	mCV22910364	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss135590376	ENSMUSSNP1539051	ENSEMBL	ENSEMBL_Sanger	f	SNP			G
ss320871736	CHEV_3_109946063	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30563598					SNP	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:110050461 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13719	CpG island 13719			within coordinates
Ntng1	netrin G1			mRNA-UTR
				Noncoding-Transcript-Variant
Rr583463	regulatory region 583463			152 bp distal
Rr583464	regulatory region 583464			1296 bp distal
Rr583465	regulatory region 583465			1101 bp distal
Rr583466	regulatory region 583466			191 bp distal
Rr583467	regulatory region 583467			within coordinates
Rr583468	regulatory region 583468			856 bp proximal
Rr583469	regulatory region 583469			1565 bp proximal
Tssr1022	transcription start site region 1022			261 bp upstream
Tssr35233	transcription start site region 35233			387 bp upstream
Tssr35234	transcription start site region 35234			135 bp upstream
Tssr35235	transcription start site region 35235			368 bp downstream
Tssr35236	transcription start site region 35236			417 bp downstream
Tssr35237	transcription start site region 35237			535 bp downstream
Tssr35238	transcription start site region 35238			553 bp downstream
Tssr35239	transcription start site region 35239			641 bp downstream
Tssr35240	transcription start site region 35240			792 bp downstream