rs30563584 SNP Detail

Summary

• ID
  rs30563584
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:19799926 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTGG GGATTCCGTC TTGGAATTTG
  K
  TTTGCCACTA ATTTGTAGGA CAGAC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46419508	mCV22831879	ABI	CRAMUS_MOUSE	f	SNP			G	T
ss139192886	ENSMUSSNP7215487	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		T
ss324563989	CHEV_14_20569080	CHEVERUD	SCREENING_POP	f	SNP					G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30563584					SNP	G	G	G	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:19799926 () rs orientation: forward

Symbol	Name	Function Class
Gm62728	predicted gene, 62728	681 bp downstream
Nid2	nidogen 2	1407 bp upstream
Rr389324	regulatory region 389324	within coordinates
Rr488149	regulatory region 488149	229 bp proximal
Rr488150	regulatory region 488150	256 bp proximal
Rr488151	regulatory region 488151	1278 bp proximal
Tssr124369	transcription start site region 124369	1045 bp upstream
Tssr124370	transcription start site region 124370	1079 bp upstream
Tssr124371	transcription start site region 124371	1103 bp upstream
Tssr124372	transcription start site region 124372	1418 bp upstream
Tssr127556	transcription start site region 127556	1266 bp downstream