rs30563014 SNP Detail

Summary

• ID
  rs30563014
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:57513646 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ACTATAGCGG TCTTCAGACA CTCCAGAAAA TGGCATCAGA TTTCATTACG GATGGTTGTG
  AGCCACCATG TGGTTGCTGG GGTTTGAACT CGGGACCTTT GGAAGAGCAG TCAGCGCTCT
  TAACCGCTGA GCCATCTCAC CAGCTCCCCC CACCCCCACT TTTTAAGTCT TAATTGGGTT
  GTTTTTGTTT TGATTTTGGG TTTTTGTTTT TTTGTTTTGT TTTTTGTTTT TGGGTTTTTT
  TTTTGAGACA GAGAGAGAAC ATACATAAAG TTGAGTGAGT AGTACGGAAG TGGGGAGGAT
  Y
  TGAAAGGAAT TGTGGAAGGG GAAAGAATTG CTCAAAATGC ATGTATGGAA TAAGTTTTAA
  TTAAAAATAT TCTTAAAATT AATAATTAAG TTGTGTTGCC TAGTTGCACC TCCTGGTCCA
  AGAGCATCTG GAGACCCAGT GCATTTAATA ATAATATGTT TCGACAGTGA TATTTGTGTT
  AGTGACTCAC TAAATCTAAC AATGGCTTAT GTTGGATAGA GAATCAATTT TCATAAAGCT
  CTTGAAATTG TTACCGGATC CAGCATATAG ACAGAAAAGT GTGCATATTG AGTGTGGCTC
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss45940860	mCV25134607	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs30563014					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:57513646 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17483	CpG island 17483	1401 bp distal
Cpgi17484	CpG island 17484	794 bp distal
Gm45193	predicted gene 45193	within coordinates
Ppm1k	protein phosphatase 1K (PP2C domain containing)	1193 bp upstream
Rr399669	regulatory region 399669	943 bp downstream
Rr631141	regulatory region 631141	1246 bp distal
Rr631142	regulatory region 631142	745 bp distal
Tssr61156	transcription start site region 61156	1266 bp upstream
Tssr61157	transcription start site region 61157	1240 bp upstream
Tssr61158	transcription start site region 61158	1214 bp upstream
Tssr61159	transcription start site region 61159	1164 bp upstream
Tssr61160	transcription start site region 61160	1148 bp upstream