rs30562588 SNP Detail

Summary

• ID
  rs30562588
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:7733049 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGGCCCCA GAGTAAACCA
  TCTTAGCCCC TTAAAGATGA AAGCTGTGGC TGTGGCACCA GCAGTTATGG TGCCACGGCA
  TTCTAACAAT GCCCCACTTT TCACTGGAGG AATTACCCGA TTGGAAGCCA GCTGTGTGCA
  TGGACCCACT GAGGCCAGGC TATTTGGTGT TATTTCCTCA GGCAGATTGT TGGTGTGATT
  Y
  TTCTCCTGGG GCTCTGGTTG GGCTTCTAGT TTGGTTGGCA GTACATTTTC CCCAAATTAC
  AAATTATAAA TGTGACACAA ACCAAATTCT TATATTCTAC TTTTTTAAAC CGTTAGACAA
  GTGTTTCCTA TCGAAATTTA CGTCCCTCAA GTCAGAATGC CTTGCATGAG ACTGTGCAAT
  AAAATCACTG CCCACCAGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss45940262	mCV24779768	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T
ss132954120	ENSMUSSNP1832462	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs30562588					SNP	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:7733049 () rs orientation: forward

Symbol	Name	Function Class
Rr626314	regulatory region 626314	593 bp distal
Rr626315	regulatory region 626315	within coordinates
Rr626316	regulatory region 626316	188 bp proximal