rs30562564 SNP Detail

Summary

• ID
  rs30562564
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:18418881 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATCCTTCA CTGAAGGCTA
  GCTCCCTATG GAGGGGAGGG GGAGGAGGAG GTTCCTCCCA GAAGTAGCCA GGCAGGCAAA
  CACCTTAGGT CAGAGACCTC TGATTTACCT CTGTTTTCTT CCTAAGGCTG GGTGTATTCA
  TAACCCACTC CGCATATCTC ACAGAGATTT TATCTATTTA CTTATTTATT TAATGGTTTT
  K
  GAGATGGTTG TGATGTGAAC AGCAGTCCCC CTTGTCACCA AGATTGCCAG TCTCTAAGCA
  ACTACATGTT CAGACTTGAA TGGCTTACAC TTTCCATTTT GGTTTCCTAA AATATTGTAT
  ACTGTACACT ATGGTATTCC ATTAAAATGC TACCTACATA TCAGTTCTTA GAATTTTCCT
  TCCCTTTGAG TTAAAGAGTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45940661	mCV23959681	ABI	CRAMUS_MOUSE	f	SNP		T	G					G
ss51250781	NES13802723	PERLEGEN	MM_PANEL2	f	SNP	T		G	G	G	G	G		T	G	G	G	T	T	G	T	G
ss133034556	ENSMUSSNP3702695	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30562564					SNP	T	T	G	G	G	G	G	G	T	G	G	G	T	T	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51250781	NES13802723	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:18418881 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cttnbp2	cortactin binding protein 2			Intron
				Noncoding-Transcript-Variant
Rr379006	regulatory region 379006			within coordinates
Rr626921	regulatory region 626921			478 bp distal