rs30562514 SNP Detail

Summary

• ID
  rs30562514
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:27171502 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACTCCCAC AACCCCCTTC
  CCAAATCTTA AAGACATTCC TGGAGCAGGA GAAATGGCTC AGTGGTTAAG ACCTCATAGG
  CTGCTCTGCC AGAGAACCTG GGTTCATTCC CAGCATCCAC ATGGCTCACA GCCATCTTAA
  CTCCACTCCC ACGGGGATGT GTGTCCTCTG TCGGCCTCCG TGAGCACTGT ATGGATGAGG
  Y
  ACACAGACAT GGACACTAAA TAAACATCCA TACATAATGG GAAAAAGAAA GAACCCAAAA
  TGCACCATTG GTGAAAAAAA AGTATTAAAA TATATGGTCC TGAATAAAAC TGGTCGTTTA
  TGTTGGATTT TGAAGAATTA TTAGTAAGTT TTGATGTGGG AATAAGACAA GCTAAGGTGC
  TATTTTAAAG CATAGCCATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J
ss45443810	mCV24689212	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss134702164	ENSMUSSNP6284287	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J
rs30562514					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27171502 () rs orientation: forward

Symbol	Name	Function Class
Ect2	ect2 oncogene	Intron
Rr574348	regulatory region 574348	1068 bp proximal