rs30562211 SNP Detail

Summary

• ID
  rs30562211
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79383160 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACTTCCCC CAAAGGCCAC
  AACGACATTA GGAGCTGAGC GATGGTTCAG ACCTAGGAGG CCGCTTTGGA GGCCCAGCTT
  TGCAAACGTA GGCCAGAGGT CAAACTCAGG TGCTGTTCTG TGGGTGCATC CATCTTGTGT
  CTCAAGACAT GTTCTCTCAT GAGGACCTCA CTGAGGAGGC TGGGCTTGGC CAGCAGTGAG
  Y
  GACAGGGATC TTCCCACCTC TGCCTCCCCG GTCTGGATTA TAAGCACCTG CCACCACACC
  CAGTCTTTTT TGCGTGGGTC CTGAAGAGCA AACGTGTCTT CATGCTTACC AGGCAAGCAC
  TCTCCTACTG AGCTTCCTCC CCAACCTGGG AAGCAAACTC TTACCCACTG CATCACAGTT
  TCCTTGTTCT GATGTCCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45443916	mCV24555314	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss135372203	ENSMUSSNP6174855	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs30562211					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79383160 () rs orientation: forward

Symbol	Name	Function Class
Fnip2	folliculin interacting protein 2	Intron
Rr578524	regulatory region 578524	412 bp distal
Rr578525	regulatory region 578525	179 bp proximal