rs30562205 SNP Detail

Summary

• ID
  rs30562205
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:54632440 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TTGTTTTTAT GTTTTGTTTT GTTTTGTTTT TAAGACAGGG TTTCTCTGTA TAACCCTGGC
  TGTCCTGGAA TTCACTTTGT AGACCAGGCT GGCCTCGAAC TCAGAAATCC GCCTGCCTCC
  CAAGTGCTGG AACTAAAGGT GTGCGCCACC ACTCCCGGCC CTTTCTCCTT TAATTTCCTC
  TTAAGAGTTC TGCAGTTTTG TCTTTCCTTT AATTTATTAA GATGCTTTTT CTTTCTTTCT
  TTCTTTCTTT CTTTCTTTCT TTCTTTCTTT CTTTCTTTCT TTCTCTCTTT CTCTCTTTCT
  Y
  TCTTTCTTTC TTTCTTTCTT TCTTTCTTTC TTTCTTTCTT TCTTTCTTTG ACTTTATATG
  ATCTTGAGAG GGCTGACAAG AGTCTATCTT GTTAAAATAT TTTTATGTAT TTGGGTGTTT
  TGCTTGCATG TATATCTGTG CACCATGTAC TTGAATGGTA CATGTGGAGG CCAAAGAGGA
  TGTTGGGTCC ACTGGAACTG GAGTTAGAAA TGGCTGAGTC AAGCCGGGCA CATGCCTTTA
  ATCCCAGCAC TTGGGAGGCA GAGGCAGGCG GATTTCTGAG TCCGAGGCCA GCCTGGTCTA
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss45443910	mCV23306947	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss135184777	ENSMUSSNP6319303	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs30562205					SNP	T	C	?

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54632440 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr397673	regulatory region 397673			993 bp downstream
Rr397674	regulatory region 397674			478 bp downstream
Rr576833	regulatory region 576833			547 bp distal
Supt20	SPT20 SAGA complex component			Intron
				Noncoding-Transcript-Variant