rs30561965 SNP Detail

Summary

• ID
  rs30561965
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:72577061 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAATG AGCAGATTTA CTGGACATAG
  Y
  GGCACATTCC TGTGATCCCA GCGCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45941630	mCV22785773	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C
ss133286149	ENSMUSSNP5406712	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		C
ss321822391	CHEV_6_72550072	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30561965					SNP	T	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72577061 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17548	CpG island 17548	1108 bp distal
Elmod3	ELMO/CED-12 domain containing 3	1665 bp upstream
Retsat	retinol saturase (all trans retinol 13,14 reductase)	Intron
Rr399707	regulatory region 399707	1448 bp downstream
Rr632239	regulatory region 632239	1747 bp distal
Rr632240	regulatory region 632240	1440 bp distal
Rr632241	regulatory region 632241	1833 bp proximal
Tssr57150	transcription start site region 57150	1469 bp downstream
Tssr61470	transcription start site region 61470	1710 bp upstream
Tssr61471	transcription start site region 61471	1654 bp upstream