rs30561250 SNP Detail

Summary

• ID
  rs30561250
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:18435783 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTAATATTT AAAGACCCAT
  TAAAATGAGA AGATTGACAA AGGGTTTTCT GCAAAATATC CACATTAAGA AAAAAAAAGG
  GAATTGTTTT AATCTATTAA ATGTAACTAC AGTGCAGGAA AACAGTAATA GGGTGTTTCA
  AGTCACAGCA CAGAGTTGAA AAAGAACTGT TTGGATGAGT ACAGATCAGT GAGAGAACTG
  R
  TGCTATTTAA GAAAGGTTCA ATGGCTGCAA ATTATTAGCT GATCTCTGAG GCACACAATC
  AGGTTTTAAA TCTCAAGCCG CATAGTTGCT AATGGTACTA AATTGCTAAA TTACTTAACC
  TCTTTGAGAA TCCTCTGATA GGCTAGAAGT CATATGAAGT AGCATATAAA GGGATTTTTA
  GAATGAAAGT ATAATGCGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	CAST/EiJ	DBA/2J	WSB/EiJ
ss45941334	mCV23958667	ABI	CRAMUS_MOUSE	f	SNP	A	G		G
ss51250477	NES13802230	PERLEGEN	MM_PANEL2	f	SNP			A		G
ss133034799	ENSMUSSNP6433100	ENSEMBL	ENSEMBL_Sanger	f	SNP	A			G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	CAST/EiJ	DBA/2J	WSB/EiJ
rs30561250					SNP	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51250477	NES13802230	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:18435783 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cttnbp2	cortactin binding protein 2			Intron
				Noncoding-Transcript-Variant
Gm40356	predicted gene, 40356			within coordinates
Gm67618	predicted gene, 67618			within coordinates
Rr626922	regulatory region 626922			737 bp distal
Rr626923	regulatory region 626923			1021 bp distal
Rr626924	regulatory region 626924			725 bp proximal