rs30560441 SNP Detail

Summary

• ID
  rs30560441
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:80832716 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTATGAA ATAATAGTTA
  GGTTAATAAC TGTTTCCACT TCACTATTTT TATACTATTT TGGAACCTTC TGTTTGTGCT
  GGAAAAGTCA TCCTCTACTG GCCCCCTACC ACTTTACCTC ACACCTGCCA TGTAGTCAAA
  GTCTTTGCTA CAAGCTCCTT ATGGGATGTA CTTCCAGAAG AAGATGATGT GTGCATCTTA
  R
  CCAATGAGAA AACCAAGGCT TATAAATTCT ATGTAGCATC TCCTATGGAC ATTGATCTAT
  GTGGTGTCAG AACTTGGATG TGACCTTTGC TTAGGTCTGT CTAAAGCTAG AAGTCATAAT
  GTTTCTGTCT CCACGAATTT CATTTCTGTT TCTGTAATAC AATACCCTGA GAATATCAGC
  TTAATGAAAA ACAGATTTAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45940732	mCV22539996	ABI	CRAMUS_MOUSE	f	SNP	A	A	G					G		G
ss51717808	NES14803538	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	G	G	G		G	G	G	A	G	G	G	A	A
ss133329740	ENSMUSSNP800993	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30560441					SNP	A	A	G	A	G	G	G	G	G	G	G	A	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51717808	NES14803538	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:80832716 () rs orientation: forward

Symbol	Name	Function Class
Gm66997	predicted gene, 66997	1912 bp downstream
Rr632540	regulatory region 632540	1178 bp proximal