rs30560288 SNP Detail

Summary

• ID
  rs30560288
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:112471655 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TACACTGGTG CTTCAAAAGG CCCAGGACAC AGCGGGATGG
  GACCTCTCTG TGCACTTATT AAATATGGAG TGGTGGGAGA GGAAATGGAA GAGAAATAAG
  Y
  ATTTCCCACG GCTGTTCCGC TCTGTTGAGA GCAGGATCAC CACCTGGGGC AGACAATCTG
  CCTGAAGAAT GACCCCTGCG GCATCCCCCC CGGGAACGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
ss45941121	mCV22774658	ABI	CRAMUS_MOUSE	f	SNP		C	C					C		T
ss51849183	NES14775817	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	T	C		C	T	C	T	C	T
ss133560280	ENSMUSSNP1409238	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
rs30560288					SNP	C	C	C	C	C	T	C	C	C	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51849183	NES14775817	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:112471655 () rs orientation: forward

Symbol	Name	Function Class
Rr636354	regulatory region 636354	within coordinates
Rr636355	regulatory region 636355	229 bp proximal
Rr636356	regulatory region 636356	1679 bp proximal