rs30559521 SNP Detail

Summary

• ID
  rs30559521
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:80946022 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ACTCCTTTGC TCTTGATCTA CCACTATAAA GCCATTTTTT GAGACTCTTT TGTAAATAGA
  AATTTTATAC CACACATGAA ACCACAATGC TAATGTAGGC AGCCTAAAAC TGGAATATTA
  AATACCCTGT TTACAATACA AGGGGAGGTT CTCGCTGCTA TTTAAGAGGG AAATATACAT
  GTTTTTCCTA CTTTGTTATC TATTTACAAT GCAATTTCAC TAGCCAGGTA AGATGACTGC
  CAGAGACAGT TGGGAAATGA GGATGGAGTG ATATATATAT ACATATATAC ATATACATAT
  R
  TATGTATATA TATATATATT GCTTCAAGGC TTCACATCTG GATTTCAACT CTATAAAGGA
  CACATCTTAA AACAAAGTCC AAAAATACAT ATGTTCTCTT CATCATTCCT ATGCATTGCT
  GGGCCAGGGT AATAGCATGG TGTTTCTTGG TATGCTTGCT CCTTACCTCT GGCTAATGTG
  ATGGCATGTG GCACCTTAAG GCTCTTGAAC TGCTGATCAA AGGGCAGCCT AGTGATCTAT
  CTATAATCAT AGGGCCTGCA GAGACCTGAG AGATCAAAGG AGCCACAACA CCAGCTATAC
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45442159	mCV24540401	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30559521					SNP	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:80946022 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13283	CpG island 13283	888 bp distal
Gm16000	predicted gene 16000	within coordinates
Gm64611	predicted gene, 64611	within coordinates
Pdgfc	platelet-derived growth factor, C polypeptide	Intron
Rr578683	regulatory region 578683	1606 bp distal
Rr578686	regulatory region 578686	1747 bp distal
Rr578687	regulatory region 578687	1043 bp distal
Rr578688	regulatory region 578688	725 bp distal
Rr578689	regulatory region 578689	132 bp proximal
Rr578690	regulatory region 578690	658 bp proximal
Rr578691	regulatory region 578691	845 bp proximal
Tssr29618	transcription start site region 29618	1977 bp downstream
Tssr29619	transcription start site region 29619	1704 bp downstream
Tssr29620	transcription start site region 29620	1639 bp downstream
Tssr29621	transcription start site region 29621	1510 bp downstream
Tssr29622	transcription start site region 29622	1490 bp downstream
Tssr29623	transcription start site region 29623	1324 bp downstream