rs30559491 SNP Detail

Summary

• ID
  rs30559491
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:151556430 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGCACCAC ACACCACAGG
  CAGAACTCTC AGCTGCAGGG GGAAGATTGA AAAAGTAAAA ACAGGACTCT ATCTTGGACC
  TCTGAGGTGT CAGGCTCACT ACAGTAAAAC CCAAAATCAG GAAGAATCCA GGGACACCTT
  GTCCCCTGGC CAGTGTTTGT AAACAGTGTC TGGACCTGCC CCAGCACCAA GGAAAGACTC
  S
  TGTCCCTGTA GGAAAGTCTC CTGTTTCACT CTGCACACCC CCAGCTGTGG AATGGGCCTG
  GGGCACTTAT CCAAGGTTGT GCAGGTTCCT AAAGCCACAA GACTCAGAAG CAAGCAAGCT
  TATTGTCAGC TTTAGCGACT AAGGCACTGA CTGGCCACCT TACCATGCTC CAGCCTCAGG
  AATCACAACA GACAGAGCAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45443213	mCV24029265	ABI	CRAMUS_MOUSE	f	SNP	G	C					C
ss61100090	NES16614336	PERLEGEN	MM_PANEL2	f	SNP	G	C	C	C	G	C		C	C	C	G		C	C	C	G		C
ss136099230	ENSMUSSNP781362	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss321027284	CHEV_3_151513757	CHEVERUD	SCREENING_POP	f	SNP												G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30559491					SNP	G	C	C	C	G	C	C	C	C	C	G	G	C	C	C	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61100090	NES16614336	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151556430 () rs orientation: forward

Symbol	Name	Function Class
Gm31596	predicted gene, 31596	within coordinates
Rr587424	regulatory region 587424	632 bp proximal