rs30559275 SNP Detail

Summary

• ID
  rs30559275
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:68952355 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTACT TAGGACCACG CCCGCACGGG
  M
  TGGTTCTGGA GCTGGCGGCG CGCAG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45442909	mCV25236934	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	A	C
ss135264682	ENSMUSSNP1993194	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30559275					SNP	C	C	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68952355 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13256	CpG island 13256	within coordinates
Gm65005	predicted gene, 65005	within coordinates
Rr578118	regulatory region 578118	278 bp distal
Rr578119	regulatory region 578119	within coordinates
Rr578120	regulatory region 578120	119 bp distal
Rr578121	regulatory region 578121	111 bp proximal
Rr578122	regulatory region 578122	321 bp proximal
Rr578123	regulatory region 578123	1486 bp proximal
Trim59	tripartite motif-containing 59	280 bp upstream
Tssr29529	transcription start site region 29529	54 bp upstream
Tssr29530	transcription start site region 29530	96 bp upstream
Tssr33523	transcription start site region 33523	363 bp upstream
Tssr33524	transcription start site region 33524	355 bp upstream
Tssr33525	transcription start site region 33525	259 bp upstream
Tssr33526	transcription start site region 33526	48 bp upstream
Tssr33527	transcription start site region 33527	23 bp upstream