rs30558761 SNP Detail

Summary

• ID
  rs30558761
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108305570 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCTGATTTC ATTTTGAAAG TTAACTTGTG ATCTAGCTCT
  TGTGGCTATT CCCTGTGGAG ATAAGAAACT TAAATATGTA GATAATTTCC CCCAAATTAT
  W
  CAAAATGTAA GCGATGGAGC AGACTATACT CCTGAACGTT GGAGGATGCA CACAGATCTT
  CACTTCCTCT TAATTACAGG GCATTGAATG GAAGCTCTT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45940224	mCV23139553	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	A
ss133499632	ENSMUSSNP292357	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30558761					SNP	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108305570 () rs orientation: forward

Symbol	Name	Function Class
Itpr1	inositol 1,4,5-trisphosphate receptor 1	Intron
Rr399811	regulatory region 399811	611 bp downstream
Rr399812	regulatory region 399812	within coordinates
Rr636076	regulatory region 636076	645 bp distal
Rr636077	regulatory region 636077	1848 bp proximal