rs30558117 SNP Detail

Summary

• ID
  rs30558117
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:150929241 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAAAGTGT ATGGGCGTCA
  GCTTTGTCAA TCAGGTTGCA CAGAAACATT GAAAATATGC CTGTGTCATT TAAGGGTTTC
  ACAGCTGTTG ATCTACAGCA CCTTAAGATG CCACCCCAAA AATCCCAAAT GACCACAGAG
  TGTTTTGAAA AATAATATTA AGATAACAAA GTGCACAAAC TCCGGGACGT CAGACTAGAA
  Y
  CCGTCCATGT TTGCAGAGTG TTGACATGTA CATGGGCCTT CATCTTCTAC AAGCATTTTT
  TTCATTCATA AGCAATTGTC ATCTTTTATT TTTAAATGTG TTACATTATA ATTGGTGACT
  TGCAGACATT AAGCATTTAT TAAAGAAGCC CATATCTTTG TTAACTGTGT TCTTCATCAT
  AGCGCAAATG CAGTGAGTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47460469	NES10335663	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30558117					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47460469	NES10335663	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:150929241 () rs orientation: forward

Symbol	Name	Function Class
Rr587382	regulatory region 587382	855 bp distal
Rr587383	regulatory region 587383	950 bp distal