rs30557845 SNP Detail

Summary

• ID
  rs30557845
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30911254 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGAG ATTGACAGTC AAAGAGGGAT
  Y
  TTAGGAATGC AAGTCCTTTC TCTGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45442729	mCV25261622	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss134733975	ENSMUSSNP2895138	ENSEMBL	ENSEMBL_Sanger	f	SNP			C
ss320694180	CHEV_3_30756027	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs30557845					SNP	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30911254 () rs orientation: forward

Symbol	Name	Function Class
Gm42199	predicted gene, 42199	736 bp upstream
Gpr160	G protein-coupled receptor 160	Intron
Rr574831	regulatory region 574831	1195 bp distal
Rr574832	regulatory region 574832	1080 bp distal
Rr574833	regulatory region 574833	748 bp distal
Rr574834	regulatory region 574834	448 bp distal
Tssr28695	transcription start site region 28695	1347 bp downstream
Tssr28696	transcription start site region 28696	1103 bp downstream
Tssr28697	transcription start site region 28697	1098 bp downstream
Tssr28698	transcription start site region 28698	1079 bp downstream